Apr 12, 2017 · I attempted to open the file in excel to change the headers and the file just contained random characters. This is not a Hapmap file. This is HDF5 format. Import Guess or HDF5.

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Feb 4, 2016 · Yes, but now the error message says that "HapMap must be ordered by position". As I mentioned in my previous post, the data file is sorted by position. Could you help me get arround this...

To launch the Tassel GUI that automatically executes a pipeline, use start_tassel.bat or start_tassel.pl instead of run_pipeline.bat or run_pipeline.pl respectively. These scripts have a $top variable that can be changed to the absolute path of your installation.

At the end I upload my file in to TASSEL in hapmap format, I convert it to plink format using TASSEL, then I change the -9 for 0 using seed, then Haploview was able to read this data. I hope that this could help some one.

Dec 9, 2023 · library(rTASSEL) # start a logging file - defaults to current working directory startLogger() tasGenoHMP <-rTASSEL:: readGenotypeTableFromPath( path = GenoPathHMP, sortPositions = TRUE) Another solution would be to try adding a full path to your hapmap file.

If you need to install Java, the most recent version is available at http://www.java.com. The easiest way to tell if it is installed on your computer is to try running TASSEL from the following link:

Feb 12, 2015 · I've tried to load a HapMap input file in Tassel 5.2.3, but I have the following error message: Error loading: C:\mdp_genotype.hmp.txt Taxon [] already exists in the list. Duplicated taxa not...

Hello, I am trying to upload my VCF file from my GBS data onto Tasselv5. I am unable to upload it because I get the following error: [AWT-EventQueue-0] DEBUG …

In this tutorial, you'll learn how to convert VCF files to HapMap format using the command-line interface (CLI) of Tassel. The CLI version of Tassel is particularly useful for large datasets, where the GUI version might be less efficient.