In contrast to genome assemblers that use de Bruijn graphs, those based on string graphs are able to losslessly retain information from sequence data. However, despite the advantages provided by a ...

The new algorithm checks planarity in a number of steps proportional to the cube of the logarithm of the number of nodes in the graph — an exponential improvement. Holm and Rotenberg, a computer ...

SGA is a de novo genome assembler based on the concept of string graphs. The major goal of SGA is to be very memory efficient, which is achieved by using a compressed representation of DNA sequence ...

Graph algorithms can be used in programming to model and solve various real-world problems, such as network routing, social network analysis, recommendation systems, ...

This repository contains materials and notes from a university course on algorithms and data structures, focusing on graph algorithms, computational geometry, and string pattern matching. - ...

Graph Algorithms: Computational procedures designed to solve problems related to graph structures, encompassing processes such as traversal, shortest path determination, and network flow analysis.

The accompanying paper gives an algorithm for negative-length shortest paths (with poly-bounded edge weights) that runs in nearly linear time. This algorithm delves into some of the most important ...