Figure 3. Probability distribution functions for selected PCA eigenvalues obtained with the D model. Panel a shows the results obtained with the 100 000 individual trajectories. Panel b presents the ...

radial_distribution_function.py generates a reference atom's probability and radial distribution functions for a periodic ab initio molecular dynamics simulation. The code can be manipulated to give ...

The velocity distribution functions of particles in one- and three-dimensional harmonic solids are investigated through molecular dynamics simulations. It is shown that, as in the case of dense fluids ...

Distributional Graphormer: Toward equilibrium distribution prediction for molecular systems Published July 7, 2023 By Shuxin Zheng, Principal Researcher Chang Liu, Senior Researcher Yu Shi , ...

Water dynamics is essential to biochemical processes by mediating all such reactions, including biomolecular degeneration in solutions. To disentangle the molecular-scale distribution of water ...

Local structure analysis of low-temperature neutron pair distribution function coupled with molecular dynamics simulations of CH4 and CO2 hydrates from 2 to 210 K Show authors by Bernadette Cladek, ...