This library allows to easily plot VTK files, for example, from FEniCS or any other software, in two dimensions using Matplotlib. The VTK file can be based on an Unstructured or Structured grid, ...

Matplotlib is a python 2-d plotting library which produces publication quality figures in a variety of formats and interactive environments across platforms. Matplotlib can be used in Python scripts, ...

The atoms are added to the plot as Circle patches. The trick is to pull the atomic radii and colors from ASE, which are done with the covalent_radii and jmol_colors imports, respectively. After this, ...