It is also possible to do more than two matching regions! Similar to the macro-synteny plots, first construct multi-synteny blocks using python -m jcvi.compara.synteny mcscan, then modify the ...

Syn2Chr is a Python tools kit aiding de novo assembly of pseudochromosomes from long contigs or scaffolds, especially contigs from high coverage whole genome PacBio de novo. Chromosome painting ...

Python library to facilitate genome assembly, annotation, and comparative genomics - tanghaibao/jcvi. Skip to content. Navigation Menu Toggle navigation. ... BLAST or synteny dot plot. Histogram using ...

Synteny is defined as groups of two or more Tetraodon genes that possess an orthologue on the same human chromosome, irrespective of orientation or order.

Rapid advances in biology demand new tools for more active research dissemination and engaged teaching. This paper presents Synteny Explorer, an interactive visualization application designed to let ...

Polyploidy is common in flowering plants, resulting in extra sets of chromosomes, known as subgenomes. These events are widespread in plant evolution, making the assignment of synteny blocks to ...